JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INF2_chr14_104684618_104727535	0/0	t0001	3834	100	17	21	49	4	9	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0002	3834	35	1	8	24	0	2	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0003	3839	27	7	12	1	4	3	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0004	3869	13	0	6	7	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0005	3832	12	12	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0006	4013	10	0	2	4	0	4	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0007	3835	8	0	0	8	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/1	t0008	3904	7	2	1	2	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0009	4013	6	0	1	0	1	4	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0010	3977	6	0	0	6	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0011	3833	5	4	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0012	3834	5	4	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0013	3834	5	0	3	1	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0014	3869	5	0	1	2	2	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0015	3939	5	0	0	3	0	2	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0016	4013	4	4	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0017	3833	4	3	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0018	3839	4	4	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0019	3839	3	0	3	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0020	3834	3	0	0	3	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0021	3834	3	0	0	1	1	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0022	3834	3	0	2	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0023	3764	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0024	3867	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0025	3944	3	1	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0026	3832	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0027	3765	3	0	0	3	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0028	3765	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0029	3869	3	0	0	3	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0030	3834	3	0	0	3	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0031	3979	2	0	1	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0032	3944	2	1	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0033	3904	2	0	2	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0034	3839	2	0	2	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0035	3833	2	2	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0036	3833	2	0	1	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0037	3660	2	0	1	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0038	3972	2	0	2	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0039	3978	2	0	0	0	1	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0040	4048	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0041	3944	2	1	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0042	3833	2	2	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0043	3834	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0044	3905	2	0	1	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0045	4149	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0046	3765	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0047	3869	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0048	4118	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0049	4118	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0050	3841	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535