JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INF2_chr14_104684618_104727535	0/0	t0051	4013	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0052	4013	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0053	3833	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0054	4014	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0055	3944	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0056	3944	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0057	3834	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0058	3804	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0059	3765	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0060	3869	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0061	3867	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0062	3798	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0063	3943	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	1/0	t0064	3873	1	0	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0065	4048	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0066	3833	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0067	3839	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0068	3839	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0069	3806	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0070	3805	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0071	3977	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0072	3832	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0073	3832	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0074	3797	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0075	3867	1	0	0	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0076	3869	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0077	3834	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0078	3799	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0079	3834	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0080	4237	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0081	3834	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0082	3940	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0083	3870	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0084	3800	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0085	3772	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0086	3834	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0087	3834	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0088	3487	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0089	3834	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0090	3904	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0091	3975	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0092	3905	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0093	3730	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0094	3382	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0095	3764	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0096	3798	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	t0097	3834	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
ING1_chr13_110708700_110728339	0/1	t0001	3857	177	23	29	99	8	17	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0002	3858	51	11	11	23	2	4	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0003	3857	40	2	9	22	1	6	copy fasta	ING1	chr13	110708700	110728339