JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ING1_chr13_110708700_110728339	0/0	t0004	3858	20	1	7	7	3	2	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0005	3858	17	5	1	8	0	3	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0006	3857	14	0	0	14	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0007	3858	12	0	6	3	0	3	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0008	3854	12	0	0	10	1	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0009	3859	11	10	1	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0010	3858	11	10	1	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0011	3858	10	10	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0012	3857	6	0	4	0	2	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0013	3857	3	3	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0014	3857	3	0	0	3	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0015	3858	3	3	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0016	3858	3	3	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0017	3857	2	2	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0018	3859	2	0	0	1	0	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0019	3857	2	0	1	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0020	3858	2	0	0	2	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0021	3859	2	0	0	2	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0022	3857	2	0	2	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0023	3837	1	0	1	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0024	3857	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0025	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0026	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0027	3859	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0028	3859	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0029	3860	1	0	0	0	0	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0030	3857	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0031	3859	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0032	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0033	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0034	3857	1	0	0	0	0	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0035	3856	1	0	0	0	1	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0036	3856	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0037	3857	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0038	3857	1	0	0	0	0	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0039	3857	1	0	1	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0040	3857	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0041	3858	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0042	3857	1	0	0	0	0	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0043	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0044	3857	1	0	1	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0045	3857	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0046	3858	1	0	1	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0047	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0048	3859	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0049	3859	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0050	3858	1	0	0	0	0	1	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0051	3858	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0052	3857	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0053	3858	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339