JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ING1_chr13_110708700_110728339	1/0	t0054	3858	1	0	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	t0055	3859	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING2_chr4_183500058_183517429	1/1	t0001	1616	272	56	64	109	13	28	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0002	1616	76	12	14	43	0	7	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0003	1617	37	0	0	36	0	1	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0004	1616	31	1	1	26	1	2	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0005	1616	27	23	4	0	0	0	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0006	1616	6	1	0	5	0	0	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0007	1619	3	3	0	0	0	0	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0008	1616	1	0	0	1	0	0	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0009	1616	1	0	0	1	0	0	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0010	1616	1	0	0	1	0	0	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	t0011	1616	1	0	1	0	0	0	copy fasta	ING2	chr4	183500058	183517429
ING3_chr7_120945777_120982216	0/0	t0001	2493	154	25	31	73	6	19	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0002	2493	71	8	18	43	1	1	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0003	2490	34	26	4	4	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0004	2493	27	9	5	6	1	6	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0005	2493	16	9	0	7	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0006	2493	5	4	1	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0007	2493	4	4	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0008	2493	3	2	1	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0009	2493	2	2	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0010	2493	2	0	0	0	0	2	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0011	2493	2	2	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0012	2493	1	0	1	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0013	2493	1	0	0	0	0	1	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0014	2493	1	0	0	0	0	1	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0015	2493	1	1	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0016	2493	1	1	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0017	2493	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0018	2493	1	0	0	0	0	1	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0019	2490	1	0	1	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0020	2493	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0021	2493	1	1	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0022	2493	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	t0023	2493	1	0	0	0	0	1	copy fasta	ING3	chr7	120945777	120982216
ING4_chr12_6645301_6668119	0/1	t0001	913	380	63	78	186	12	40	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	t0002	913	8	7	1	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	t0003	913	7	7	0	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	1/0	t0004	913	4	3	0	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	t0005	913	3	3	0	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	t0006	913	2	2	0	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	t0007	913	1	1	0	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	t0008	913	1	0	1	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING5_chr2_241697039_241734478	1/0	t0001	4475	68	3	27	30	4	3	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0002	4477	54	0	5	46	2	1	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0003	4475	53	15	7	22	0	9	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0004	4475	30	3	4	16	1	6	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0005	4473	26	1	2	15	2	6	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0006	4475	16	3	0	7	0	6	copy fasta	ING5	chr2	241697039	241734478