JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ING5_chr2_241697039_241734478	0/0	t0007	4475	12	11	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0008	4475	10	10	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/1	t0009	4475	8	0	4	0	1	2	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0010	4467	8	0	0	8	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0011	4475	8	2	2	0	2	2	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0012	4475	7	0	0	7	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0013	4475	5	5	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0014	4475	5	5	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0015	4479	4	3	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0016	4475	4	0	1	0	0	3	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0017	4477	4	4	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0018	4475	4	1	3	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0019	4477	3	0	0	3	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0020	4479	3	2	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0021	4475	3	0	0	1	0	2	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0022	4475	3	2	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0023	4475	3	0	0	3	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0024	4473	3	3	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0025	4475	3	3	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0026	4475	2	2	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0027	4473	2	2	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0028	4475	2	2	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0029	4475	2	0	1	0	1	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0030	4475	2	0	0	2	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0031	4475	2	2	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0032	4477	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0033	4475	1	0	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0034	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0035	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0036	4477	1	0	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0037	4477	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0038	4477	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0039	4473	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0040	4473	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0041	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0042	4473	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0043	4473	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0044	4473	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0045	4473	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0046	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0047	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0048	4477	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0049	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0050	4475	1	0	0	0	0	1	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0051	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0052	4475	1	0	0	0	0	1	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0053	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0054	4477	1	0	0	0	1	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0055	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0056	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478