JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ING5_chr2_241697039_241734478	0/0	t0057	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0058	4477	1	0	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0059	4475	1	0	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0060	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0061	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0062	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0063	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0064	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0065	4475	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	t0066	4475	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
INHA_chr2_219567310_219580711	1/1	t0001	251	336	72	59	152	12	39	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	t0002	251	79	3	25	42	4	5	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	t0003	251	11	11	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	t0004	251	3	3	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	t0005	251	3	3	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	t0006	251	2	2	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHBA_chr7_41680114_41708090	1/1	t0001	4766	170	32	37	76	5	18	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0002	4760	73	1	16	45	1	10	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0003	4768	16	6	5	2	2	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0004	4764	13	4	1	5	1	2	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0005	4775	11	10	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0006	4770	8	1	4	0	3	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0007	4767	6	0	1	0	1	4	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0008	4765	5	5	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0009	4761	5	0	0	5	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0010	4762	5	0	0	4	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0011	4769	4	2	0	0	0	2	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0012	4767	4	2	0	1	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0013	4770	3	3	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0014	4768	3	1	2	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0015	4766	3	0	0	3	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0016	4768	2	0	0	0	0	2	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0017	4773	2	2	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0018	4769	2	2	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0019	4776	2	2	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0020	4768	2	0	0	2	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0021	4766	2	2	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0022	4769	2	0	2	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0023	4778	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0024	4772	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0025	4762	1	0	0	0	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0026	4777	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0027	4777	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0028	4775	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0029	4773	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0030	4771	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0031	4771	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0032	4767	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0033	4773	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0034	4767	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090