JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INHBA_chr7_41680114_41708090	0/0	t0035	4765	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0036	4761	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0037	4766	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0038	4777	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0039	4774	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0040	4775	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0041	4772	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0042	4770	1	0	0	0	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0043	4766	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0044	4766	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0045	4766	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0046	4766	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0047	4764	1	0	0	0	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0048	4760	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0049	4754	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0050	4760	1	0	0	0	1	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0051	4766	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0052	4768	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	t0053	4768	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBB_chr2_120341136_120356803	1/0	t0001	1983	196	35	55	66	14	25	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0002	1982	188	33	15	132	0	8	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/1	t0003	1984	23	5	4	8	2	3	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0004	1983	13	13	0	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0005	1981	12	9	1	2	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0006	1982	5	0	1	0	0	4	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0007	1983	4	0	3	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0008	1982	4	2	2	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0009	1982	2	0	0	2	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0010	1982	1	0	1	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0011	1983	1	0	0	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0012	1981	1	0	0	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0013	1983	1	0	0	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0014	1983	1	0	1	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0015	1983	1	0	0	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0016	1983	1	0	0	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0017	1982	1	0	1	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	t0018	1983	1	1	0	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBC_chr12_57429784_57457062	0/1	t0001	2144	173	19	30	92	6	25	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	1/0	t0002	2144	145	38	17	71	4	14	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0003	2144	47	10	18	12	2	5	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0004	2144	9	9	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0005	2144	4	4	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0006	2144	3	2	1	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0007	2144	3	3	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0008	2131	2	2	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0009	2144	1	0	1	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0010	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0011	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0012	2144	1	1	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0013	2144	1	0	1	0	0	0	copy fasta	INHBC	chr12	57429784	57457062