JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INHBC_chr12_57429784_57457062	0/0	t0014	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0015	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0016	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0017	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	t0018	2144	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBE_chr12_57450307_57463025	1/1	t0001	1408	194	32	40	91	8	21	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0002	1408	150	43	23	68	4	12	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0003	1413	75	15	15	39	0	6	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0004	1408	9	0	0	9	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0005	1408	4	3	1	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0006	1408	3	0	0	0	0	3	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0007	1408	2	2	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0008	1413	2	0	0	2	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0009	1413	2	2	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0010	1413	1	0	1	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0011	1408	1	1	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0012	1408	1	1	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0013	1408	1	1	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	t0014	1408	1	0	0	1	0	0	copy fasta	INHBE	chr12	57450307	57463025
INIP_chr9_112678926_112723117	1/0	t0001	3800	219	36	45	110	3	24	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0002	3804	55	3	15	31	2	4	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/1	t0003	3801	24	0	3	12	2	6	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0004	3804	12	6	1	0	2	3	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0005	3801	6	5	1	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0006	3799	6	2	1	3	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0007	3804	4	4	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0008	3797	4	4	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0009	3800	4	0	0	4	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0010	3803	4	0	0	2	2	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0011	3800	3	3	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0012	3797	3	0	2	0	1	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0013	3801	2	2	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0014	3797	2	2	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0015	3801	2	2	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0016	3800	2	2	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0017	3804	2	2	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0018	3800	1	0	1	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0019	3801	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0020	3800	1	0	0	1	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0021	3804	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0022	3801	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0023	3804	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0024	3803	1	0	0	0	1	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0025	3801	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0026	3800	1	0	0	0	0	1	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0027	3797	1	0	0	1	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0028	3800	1	0	0	1	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0029	3804	1	0	0	0	1	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0030	3800	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0031	3803	1	0	1	0	0	0	copy fasta	INIP	chr9	112678926	112723117