JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INIP_chr9_112678926_112723117	0/0	t0032	3800	1	0	0	1	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0033	3800	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0034	3804	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INIP_chr9_112678926_112723117	0/0	t0035	3800	1	1	0	0	0	0	copy fasta	INIP	chr9	112678926	112723117
INKA1_chr3_49798261_49810030	1/1	t0001	176	343	85	78	122	14	42	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	t0002	176	1	1	0	0	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA2_chr1_111717064_111744395	0/0	t0001	5059	68	1	17	35	1	14	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0002	5057	36	0	5	25	0	6	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	1/0	t0003	5058	26	0	5	14	2	4	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0004	5052	19	1	2	10	2	4	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0005	5054	17	5	0	7	3	2	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0006	5056	14	0	7	5	0	2	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0007	5061	14	2	4	8	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0008	5057	12	0	1	11	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0009	5055	11	11	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0010	5059	10	0	0	10	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0011	5063	10	0	1	7	0	2	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0012	5063	9	0	0	9	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0013	5057	9	8	1	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0014	5059	6	0	1	0	2	3	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0015	5058	6	0	0	6	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0016	5060	5	1	0	4	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0017	5055	5	0	3	1	0	1	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0018	5059	4	0	3	1	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0019	5058	4	0	4	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0020	5059	4	1	0	3	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0021	5057	4	4	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0022	5057	4	1	2	1	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0023	5061	4	3	1	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0024	5054	4	0	0	4	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0025	5046	4	4	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0026	5046	4	4	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0027	5048	4	4	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0028	5057	3	0	0	3	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0029	5057	3	3	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/1	t0030	5060	3	0	0	0	2	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0031	5052	3	3	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0032	5057	3	1	2	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0033	5057	3	0	1	2	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0034	5059	3	0	1	0	2	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0035	5061	2	2	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0036	5059	2	0	0	0	0	2	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0037	5065	2	0	0	2	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0038	5059	2	0	0	2	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0039	5065	2	1	1	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0040	5059	2	0	0	2	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0041	5063	2	0	0	2	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0042	5055	2	0	1	0	0	1	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0043	5057	2	0	2	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0044	5054	2	0	0	2	0	0	copy fasta	INKA2	chr1	111717064	111744395