JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INKA2_chr1_111717064_111744395	0/0	t0095	5061	1	0	0	0	0	1	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0096	5054	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0097	5050	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0098	5066	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0099	5070	1	0	1	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0100	5070	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0101	5060	1	0	0	1	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0102	5059	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0103	5057	1	0	0	1	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0104	5063	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0105	5053	1	0	0	0	0	1	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0106	5053	1	0	0	0	0	1	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	t0107	5059	1	1	0	0	0	0	copy fasta	INKA2	chr1	111717064	111744395
INMT_chr7_30747135_30762602	0/1	t0001	1774	139	3	30	91	6	8	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0002	1771	43	7	1	27	0	8	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0003	1769	38	0	0	32	0	6	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0004	1771	28	1	14	0	4	9	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0005	1772	26	0	3	19	1	3	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0006	1777	22	6	12	0	1	3	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	1/0	t0007	1768	21	11	2	0	4	3	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0008	1770	18	13	5	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0009	1772	11	5	0	5	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0010	1772	11	11	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0011	1773	7	0	3	3	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0012	1769	4	4	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0013	1771	4	4	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0014	1774	4	0	0	3	1	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0015	1782	3	1	2	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0016	1783	3	3	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0017	1769	3	0	1	1	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0018	1773	3	0	0	3	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0019	1774	3	0	0	3	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0020	1774	3	3	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0021	1780	2	2	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0022	1770	2	2	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0023	1770	2	0	1	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0024	1768	2	2	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0025	1771	2	0	0	2	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0026	1771	2	0	0	0	0	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0027	1770	2	0	2	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0028	1771	2	0	1	1	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0029	1774	2	0	0	2	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0030	1805	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0031	1785	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0032	1781	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0033	1783	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0034	1786	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0035	1786	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0036	1782	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0037	1768	1	0	0	1	0	0	copy fasta	INMT	chr7	30747135	30762602