JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INMT_chr7_30747135_30762602	0/0	t0038	1768	1	0	0	1	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0039	1769	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0040	1770	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0041	1770	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0042	1767	1	0	1	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0043	1778	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0044	1771	1	0	0	1	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0045	1778	1	0	0	0	1	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0046	1773	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0047	1772	1	0	0	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0048	1773	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0049	1774	1	0	0	1	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0050	1774	1	0	0	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	t0051	1772	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INO80B_chr2_74450087_74462944	1/1	t0001	111	329	88	74	113	16	36	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	t0002	111	1	0	0	1	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80C_chr18_35463333_35502960	0/0	t0001	364	193	56	32	70	4	31	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	1/0	t0002	365	102	12	1	82	0	6	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/1	t0003	365	44	1	28	5	5	4	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0004	364	26	11	2	8	0	5	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0005	364	8	8	0	0	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0006	366	6	0	0	6	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0007	366	5	0	3	1	0	1	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0008	364	2	1	0	0	1	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0009	365	1	0	0	0	0	1	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0010	364	1	0	0	1	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0011	364	1	0	0	1	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	t0012	364	1	1	0	0	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80D_chr2_205988721_206091174	0/0	t0001	11045	85	12	18	37	4	14	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	1/0	t0002	11045	54	25	6	15	2	5	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0003	11043	44	2	9	22	5	6	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0004	11045	19	0	14	0	3	2	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0005	11043	14	0	1	13	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0006	11046	13	3	3	7	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0007	11045	9	0	6	1	1	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0008	11046	6	6	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0009	11044	6	6	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0010	11046	5	1	1	2	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0011	11046	5	3	0	2	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0012	11044	4	0	0	4	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0013	11045	4	4	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0014	11045	4	0	0	4	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0015	11045	3	0	3	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0016	11045	3	3	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0017	11045	3	0	0	3	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0018	11046	2	0	2	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0019	11045	2	2	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0020	11043	2	0	0	2	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0021	11043	2	0	2	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0022	11044	2	1	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174