JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INO80D_chr2_205988721_206091174	0/0	t0023	11045	2	2	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0024	11045	1	0	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0025	11044	1	0	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0026	11044	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0027	11044	1	0	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0028	11044	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0029	11044	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0030	11029	1	0	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0031	11042	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0032	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0033	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0034	11043	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0035	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0036	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0037	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0038	11043	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0039	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0040	11043	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0041	11044	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0042	11044	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0043	11044	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0044	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0045	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0046	11044	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0047	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0048	11046	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0049	11045	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0050	11046	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0051	11045	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0052	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/1	t0053	11043	1	0	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0054	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0055	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0056	11045	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0057	11045	1	0	0	0	1	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0058	11046	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0059	11045	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0060	11045	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0061	11056	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0062	11045	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0063	11046	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	t0064	11045	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80E_chr16_29991241_30010791	1/1	t0001	420	307	71	57	136	10	31	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0002	420	18	10	4	0	4	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0003	420	7	0	0	7	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0004	420	2	0	0	2	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0005	420	2	2	0	0	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0006	420	1	0	0	1	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0007	420	1	0	0	1	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0008	420	1	1	0	0	0	0	copy fasta	INO80E	chr16	29991241	30010791