JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INO80E_chr16_29991241_30010791	0/0	t0009	420	1	0	0	0	0	1	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0010	420	1	0	0	1	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	t0011	420	1	0	1	0	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80_chr15_40973880_41121280	0/1	t0001	1694	92	13	17	50	4	7	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0002	1695	73	7	15	38	4	9	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0003	1695	42	26	3	9	2	2	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0004	1692	15	12	2	0	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0005	1696	12	0	4	3	0	5	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0006	1695	9	0	6	2	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0007	1692	8	7	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0008	1695	7	7	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0009	1693	4	4	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0010	1696	3	1	2	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0011	1696	2	0	0	1	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0012	1695	2	0	1	0	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0013	1692	2	2	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0014	1694	2	2	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0015	1683	1	0	0	1	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0016	1694	1	0	0	0	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0017	1695	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0018	1695	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	1/0	t0019	1695	1	0	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0020	1694	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0021	1696	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0022	1692	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	t0023	1695	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INPP1_chr2_190338589_190376665	0/1	t0001	845	186	11	46	98	10	20	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0002	845	77	11	15	40	5	6	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0003	845	55	16	1	38	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	1/0	t0004	845	31	17	6	3	1	3	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0005	845	14	11	2	0	0	1	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0006	845	14	12	0	2	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0007	845	14	1	3	8	0	2	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0008	845	5	4	1	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0009	845	3	0	0	0	0	3	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0010	845	2	2	0	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0011	845	2	0	0	2	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0012	845	1	1	0	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0013	845	1	0	0	1	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0014	845	1	0	0	1	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0015	845	1	0	0	1	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0016	845	1	0	0	0	0	1	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0017	845	1	1	0	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	t0018	845	1	1	0	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP4A_chr2_98439858_98599392	0/1	t0001	7194	75	4	22	38	4	6	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	1/0	t0002	7178	67	9	18	27	4	8	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	t0003	7178	26	10	5	10	0	1	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	t0004	7178	22	0	7	3	4	8	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	t0005	7178	12	12	0	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	t0006	7194	7	0	0	7	0	0	copy fasta	INPP4A	chr2	98439858	98599392