JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INPP4B_chr4_142018160_142851301	0/0	t0010	5972	3	3	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0011	5972	2	0	1	0	1	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0012	5972	2	0	1	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0013	5972	2	2	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0014	5975	2	0	1	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0015	5969	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0016	5976	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0017	5972	1	0	0	1	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0018	5973	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0019	5972	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0020	5972	1	0	0	0	1	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0021	5972	1	0	1	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0022	5972	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0023	5972	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0024	5972	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0025	5972	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	t0026	5972	1	1	0	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP5A_chr10_132532787_132788480	0/0	t0001	1761	116	18	28	43	8	19	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	1/0	t0002	1762	44	25	11	4	0	3	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0003	1762	7	6	1	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/1	t0004	1761	6	1	2	0	0	2	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0005	1757	5	1	2	0	2	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0006	1759	3	3	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0007	1761	3	0	0	0	0	3	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0008	1761	3	3	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0009	1752	2	2	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0010	1762	2	0	1	0	0	1	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0011	1764	2	0	0	0	0	2	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0012	1758	2	1	1	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0013	1761	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0014	1761	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0015	1761	1	0	1	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0016	1762	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0017	1762	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0018	1764	1	0	1	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0019	1765	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0020	1761	1	0	0	1	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	t0021	1757	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5B_chr1_37855697_37952053	0/1	t0001	1709	142	43	18	63	5	12	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0002	1709	75	13	16	33	5	8	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0003	1707	62	1	19	36	2	4	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0004	1709	13	0	5	0	2	6	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	1/0	t0005	1709	13	12	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0006	1710	7	0	0	6	0	1	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0007	1709	4	3	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0008	1709	4	4	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0009	1709	4	3	1	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0010	1709	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0011	1710	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0012	1709	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053