JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INPP5B_chr1_37855697_37952053	0/0	t0013	1709	2	0	2	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0014	1709	1	0	0	0	0	1	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0015	1710	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0016	1710	1	0	1	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0017	1709	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0018	1709	1	0	1	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0019	1709	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0020	1707	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0021	1709	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0022	1709	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0023	1710	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0024	1709	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0025	1709	1	0	1	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0026	1710	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	t0027	1709	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5D_chr2_233055342_233212903	0/0	t0001	1333	95	6	26	39	6	18	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	1/1	t0002	1333	78	17	14	23	5	17	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0003	1333	41	14	8	14	0	5	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0004	1333	38	7	7	21	1	2	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0005	1333	12	11	1	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0006	1333	10	10	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0007	1333	8	8	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0008	1333	6	2	2	0	0	2	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0009	1333	4	2	2	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0010	1333	3	0	2	0	0	1	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0011	1333	3	3	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0012	1333	2	0	0	2	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0013	1333	2	0	0	2	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0014	1333	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0015	1333	1	0	0	0	0	1	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0016	1333	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0017	1333	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0018	1333	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0019	1333	1	0	0	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0020	1333	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	t0021	1333	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5E_chr9_136423619_136444845	1/0	t0001	1483	225	56	32	97	11	28	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/1	t0002	1483	53	3	17	22	3	7	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0003	1483	47	7	19	12	3	6	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0004	1483	24	21	2	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0005	1483	4	0	3	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0006	1483	3	1	2	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0007	1483	3	0	0	3	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0008	1483	3	3	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0009	1483	2	1	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0010	1483	2	0	0	2	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0011	1483	2	0	2	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0012	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0013	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0014	1483	1	0	0	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845