JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INPP5E_chr9_136423619_136444845	0/0	t0015	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0016	1483	1	0	0	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0017	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0018	1483	1	0	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0019	1483	1	0	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0020	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0021	1445	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0022	1483	1	0	0	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0023	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0024	1483	1	0	0	0	1	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	t0025	1483	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5F_chr10_119721050_119834147	0/1	t0001	1581	156	29	41	68	5	12	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	1/0	t0002	1581	66	17	7	27	6	8	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0003	1581	29	0	2	15	2	10	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0004	1581	19	14	0	5	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0005	1567	18	6	7	0	1	4	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0006	1581	11	4	7	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0007	1581	5	5	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0008	1581	4	0	0	4	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0009	1581	2	2	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0010	1581	2	2	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0011	1569	2	0	0	2	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0012	1581	2	0	0	2	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0013	1581	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0014	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0015	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0016	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0017	1581	1	0	0	1	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0018	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0019	1581	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0020	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0021	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0022	1581	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0023	1581	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	t0024	1581	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5J_chr22_31117966_31139697	1/1	t0001	328	418	95	75	188	16	42	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	t0002	328	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	t0003	328	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	t0004	328	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	t0005	328	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5K_chr17_1489577_1521612	1/0	t0001	1360	195	35	35	102	2	20	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0002	1360	28	7	3	10	3	5	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0003	1360	27	2	3	19	2	1	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0004	1360	24	7	5	8	0	4	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0005	1360	22	0	5	9	1	7	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/1	t0006	1360	17	4	0	12	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0007	1360	16	4	4	6	2	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0008	1360	7	6	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0009	1360	7	0	0	7	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0010	1360	7	0	7	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612