JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INPP5K_chr17_1489577_1521612	0/0	t0011	1360	6	6	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0012	1360	5	0	2	0	1	2	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0013	1360	4	4	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0014	1360	4	0	3	0	1	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0015	1360	4	4	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0016	1360	3	0	1	2	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0017	1360	3	0	1	0	1	1	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0018	1360	3	0	3	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0019	1360	2	2	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0020	1360	2	0	0	1	1	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0021	1360	2	0	1	0	1	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0022	1360	2	2	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0023	1360	2	0	0	2	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0024	1360	2	0	0	2	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0025	1360	2	1	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0026	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0027	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0028	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0029	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0030	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0031	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0032	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0033	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0034	1360	1	0	0	0	0	1	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0035	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0036	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0037	1360	1	0	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0038	1360	1	0	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0039	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0040	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0041	1360	1	0	0	0	1	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0042	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0043	1360	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0044	1360	1	0	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0045	1360	1	0	0	0	0	1	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0046	1360	1	0	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0047	1360	1	0	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0048	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	t0049	1360	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPPL1_chr11_72219767_72244147	1/0	t0001	1013	262	53	44	115	10	39	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/1	t0002	1013	41	21	7	11	1	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0003	1013	9	0	0	8	1	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0004	1013	9	9	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0005	1009	4	0	3	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0006	1013	3	0	0	3	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0007	1013	3	3	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0008	1013	2	2	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0009	1013	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0010	1013	1	0	0	0	0	1	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0011	1013	1	1	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147