JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INPPL1_chr11_72219767_72244147	0/0	t0012	1013	1	1	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	t0013	1013	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INSC_chr11_15109923_15252208	0/0	t0001	1295	98	15	23	40	0	20	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	1/1	t0002	1295	57	20	11	17	4	3	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0003	1296	25	10	3	11	0	1	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0004	1293	21	5	7	2	3	4	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0005	1296	20	15	0	4	0	1	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0006	1295	13	10	0	0	2	1	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0007	1295	6	0	2	4	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0008	1296	5	5	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0009	1295	3	0	0	0	1	2	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0010	1296	2	2	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0011	1295	2	1	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0012	1296	2	1	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0013	1296	2	0	0	2	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0014	1295	2	1	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0015	1295	2	2	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0016	1295	2	2	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0017	1296	1	0	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0018	1295	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0019	1295	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0020	1295	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0021	1296	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0022	1296	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0023	1296	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	t0024	1296	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSIG1_chr7_155292878_155315235	1/0	t0001	2075	315	57	68	151	16	22	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0002	2076	41	10	2	22	1	6	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0003	2075	32	2	0	29	0	1	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0004	2075	11	0	0	11	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0005	2075	8	8	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0006	2073	4	4	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0007	2075	4	4	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/1	t0008	2075	4	0	1	0	1	1	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0009	2075	3	2	1	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0010	2069	3	2	1	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0011	2076	2	0	0	0	0	2	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0012	2075	2	1	1	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0013	2075	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0014	2075	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0015	2075	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0016	2075	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0017	2075	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0018	2075	1	0	0	0	0	1	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0019	2075	1	0	1	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0020	2151	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0021	2075	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0022	2075	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0023	2075	1	0	1	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0024	2075	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235