JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSIG1_chr7_155292878_155315235	0/0	t0025	2075	1	0	0	0	0	1	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0026	2075	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	t0027	2075	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG2_chr2_118083471_118115997	0/0	t0001	2883	90	7	19	55	2	7	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0002	2886	84	15	5	60	0	4	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0003	2881	56	7	12	29	2	6	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0004	2882	53	31	9	4	2	7	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0005	2882	41	1	6	20	4	10	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0006	2885	15	12	0	3	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0007	2882	15	0	9	1	1	4	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/1	t0008	2885	9	2	6	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0009	2886	9	9	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0010	2881	7	0	1	6	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0011	2882	7	0	3	0	3	1	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0012	2883	7	3	1	3	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0013	2882	5	0	3	0	2	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0014	2884	4	1	2	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0015	2883	4	0	0	4	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0016	2882	4	4	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0017	2884	4	0	0	4	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0018	2883	4	0	0	3	0	1	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0019	2882	3	0	0	0	0	3	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0020	2879	3	0	0	3	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0021	2882	2	0	0	1	0	1	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0022	2883	2	0	2	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0023	2881	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0024	2884	1	1	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0025	2881	1	0	1	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0026	2878	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0027	2881	1	1	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0028	2881	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0029	2886	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0030	2883	1	0	1	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	1/0	t0031	2885	1	0	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0032	2882	1	1	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0033	2879	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	t0034	2882	1	1	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSL3_chr19_17811512_17826519	0/1	t0001	356	291	75	48	129	9	29	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	1/0	t0002	356	153	22	30	72	7	21	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	t0003	356	5	1	4	0	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	t0004	356	1	0	0	1	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	t0005	356	1	1	0	0	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	t0006	356	1	1	0	0	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL4_chr9_5226419_5240304	1/1	t0001	1533	354	39	72	187	12	42	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0002	1533	18	17	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0003	1529	11	10	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0004	1533	9	9	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0005	1533	9	7	2	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0006	1533	4	0	2	0	2	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0007	1533	4	4	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304