JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSL4_chr9_5226419_5240304	0/0	t0008	1533	3	0	3	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0009	1529	2	2	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0010	1533	2	0	0	2	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0011	1533	2	2	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0012	1533	2	2	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0013	1533	1	1	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0014	1533	1	1	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0015	1533	1	1	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0016	1533	1	1	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0017	1533	1	0	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0018	1533	1	0	0	1	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0019	1533	1	0	0	1	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	t0020	1533	1	0	0	1	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL5_chr1_66792740_66806276	1/1	t0001	329	444	93	80	207	18	44	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	t0002	328	3	0	0	3	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	t0003	329	1	0	0	1	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	t0004	329	1	0	0	1	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	t0005	329	1	1	0	0	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL6_chr9_5158868_5190639	1/1	t0001	83	379	90	78	156	8	45	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	t0002	83	3	3	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	t0003	83	1	0	0	0	0	1	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	t0004	83	1	1	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSM1_chr20_20363104_20375949	0/1	t0001	1314	383	57	69	197	18	41	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0002	1314	23	21	2	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0003	1314	14	12	2	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0004	1315	9	0	3	4	0	2	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	1/0	t0005	1314	3	2	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0006	1314	2	0	0	0	0	2	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0007	1314	2	2	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0008	1314	1	1	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0009	1314	1	0	0	1	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0010	1314	1	0	0	1	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0011	1314	1	0	0	1	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0012	1314	1	0	0	0	0	1	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	t0013	1315	1	1	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM2_chr14_35529164_35542054	0/0	t0001	1191	225	58	16	118	4	29	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	1/1	t0002	1191	171	26	50	69	8	16	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	t0003	1191	3	3	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	t0004	1191	1	1	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	t0005	1191	1	0	0	1	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	t0006	1191	1	0	0	0	0	1	copy fasta	INSM2	chr14	35529164	35542054
INSRR_chr1_156835063_156864117	0/1	t0001	1307	183	49	41	63	10	19	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0002	1308	50	0	14	24	2	10	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0003	1307	34	10	8	14	0	2	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	1/0	t0004	1307	21	15	0	2	0	3	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0005	1307	17	3	5	6	0	3	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0006	1307	10	7	0	3	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0007	1307	8	3	2	0	1	2	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0008	1308	6	0	0	5	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0009	1307	4	1	0	2	0	1	copy fasta	INSRR	chr1	156835063	156864117