JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSRR_chr1_156835063_156864117	0/0	t0010	1306	3	3	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0011	1307	2	0	0	2	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0012	1307	2	2	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0013	1307	2	0	1	0	1	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0014	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0015	1307	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0016	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0017	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0018	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0019	1307	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0020	1308	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0021	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0022	1307	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0023	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0024	1307	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0025	1307	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0026	1308	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	t0027	1308	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSR_chr19_7107265_7299414	0/0	t0001	5323	35	1	21	6	3	4	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0002	5323	17	2	5	9	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0003	5321	13	0	3	4	1	5	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0004	5315	7	4	0	0	0	3	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0005	5324	7	0	2	5	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0006	5321	6	0	2	4	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0007	5324	6	1	4	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0008	5323	5	2	0	3	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0009	5324	4	1	0	3	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0010	5329	3	0	0	3	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0011	5324	3	0	0	1	0	2	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0012	5320	3	1	0	2	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0013	5322	3	1	1	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0014	5325	3	0	0	1	0	2	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0015	5326	3	0	2	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0016	5316	3	2	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0017	5320	3	0	0	2	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0018	5321	3	0	0	3	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0019	5316	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0020	5315	2	0	1	0	1	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0021	5323	2	1	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0022	5324	2	0	0	1	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0023	5315	2	1	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0024	5322	2	0	1	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0025	5325	2	0	0	2	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0026	5316	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0027	5314	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0028	5323	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0029	5330	2	0	0	2	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0030	5322	2	0	0	1	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0031	5324	2	1	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0032	5325	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414