Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD40_chr17_50688198_50712914	0/0	t0007	3071	10	1	1	7	0	1	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0008	3073	10	0	5	5	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0009	3072	8	0	2	5	0	1	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0010	3073	8	1	0	4	1	2	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0011	3073	7	5	2	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0012	3074	5	0	3	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0013	3073	5	5	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0014	3075	5	1	0	3	0	1	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0015	3071	4	0	2	0	2	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0016	3074	4	3	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0017	3072	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0018	3073	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0019	3072	2	1	1	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0020	3072	2	0	0	0	0	2	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0021	3073	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0022	3073	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0023	3074	2	1	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0024	3073	2	1	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0025	3073	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0026	3060	2	2	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	1/0	t0027	3060	2	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0028	3070	1	0	0	0	0	1	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0029	3072	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0030	3070	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0031	3072	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0032	3074	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0033	3060	1	0	1	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0034	3071	1	0	1	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0035	3071	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0036	3075	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0037	3070	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0038	3073	1	0	1	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0039	3072	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0040	3072	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0041	3074	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0042	3073	1	0	0	0	0	1	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0043	3073	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0044	3074	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0045	3073	1	1	0	0	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0046	3073	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	t0047	3073	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD42_chr11_83188712_83253971	1/0	t0001	1727	88	6	17	54	6	4	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0002	1723	70	9	16	35	4	6	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/1	t0003	1719	46	12	8	20	1	4	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0004	1725	21	8	4	4	1	4	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0005	1721	12	2	0	10	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0006	1731	11	1	1	7	0	2	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0007	1729	10	1	4	4	1	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0008	1717	9	0	0	6	0	3	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	t0009	1719	7	3	1	1	1	1	copy fasta	ANKRD42	chr11	83188712	83253971