JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSR_chr19_7107265_7299414	0/0	t0133	5321	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0134	5321	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0135	5320	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0136	5321	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0137	5323	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0138	5322	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0139	5324	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0140	5323	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0141	5324	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0142	5325	1	0	0	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0143	5326	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0144	5323	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0145	5325	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0146	5326	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0147	5326	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0148	5326	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0149	5328	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0150	5325	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0151	5326	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0152	5324	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0153	5325	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0154	5320	1	0	0	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0155	5325	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0156	5324	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0157	5315	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0158	5321	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0159	5323	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0160	5322	1	0	0	0	1	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0161	5320	1	0	0	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0162	5321	1	0	0	0	1	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0163	5324	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0164	5315	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0165	5331	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0166	5314	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0167	5315	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0168	5321	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0169	5324	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	t0170	5326	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSYN1_chr15_73730458_73758351	0/0	t0001	6268	62	9	15	30	1	7	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0002	6271	53	0	5	47	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0003	6266	37	4	20	4	2	7	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0004	6269	30	7	5	16	1	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0005	6268	23	1	3	12	2	5	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	1/0	t0006	6269	11	10	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0007	6274	10	0	0	7	0	3	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0008	6266	10	0	2	8	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0009	6270	9	2	1	5	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0010	6273	7	0	0	6	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0011	6268	6	2	4	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0012	6266	6	1	4	0	1	0	copy fasta	INSYN1	chr15	73730458	73758351