JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSYN1_chr15_73730458_73758351	0/0	t0013	6278	6	0	0	6	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/1	t0014	6270	6	0	0	4	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0015	6272	5	2	0	2	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0016	6266	4	3	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0017	6269	4	0	0	3	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0018	6269	4	4	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0019	6268	4	4	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0020	6266	3	0	0	3	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0021	6262	3	3	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0022	6275	3	2	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0023	6268	3	0	2	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0024	6268	3	3	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0025	6272	3	0	0	3	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0026	6266	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0027	6268	2	1	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0028	6275	2	1	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0029	6269	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0030	6269	2	1	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0031	6269	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0032	6269	2	0	0	0	0	2	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0033	6270	2	0	0	0	2	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0034	6264	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0035	6258	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0036	6268	2	0	0	0	1	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0037	6264	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0038	6271	2	0	0	0	2	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0039	6268	2	0	0	2	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0040	6273	2	1	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0041	6274	2	0	1	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0042	6258	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0043	6266	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0044	6268	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0045	6268	1	0	0	0	1	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0046	6268	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0047	6271	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0048	6267	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0049	6268	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0050	6269	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0051	6271	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0052	6273	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0053	6271	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0054	6271	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0055	6271	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0056	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0057	6268	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0058	6269	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0059	6267	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0060	6265	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0061	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0062	6271	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351