JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSYN1_chr15_73730458_73758351	0/0	t0063	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0064	6272	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0065	6266	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0066	6270	1	0	0	0	1	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0067	6268	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0068	6268	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0069	6266	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0070	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0071	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0072	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0073	6268	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0074	6271	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0075	6279	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0076	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0077	6266	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0078	6268	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0079	6270	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0080	6291	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0081	6266	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0082	6268	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0083	6272	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0084	6268	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0085	6282	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0086	6274	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0087	6272	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0088	6270	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0089	6268	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0090	6268	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0091	6268	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0092	6266	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0093	6266	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0094	6258	1	0	0	0	0	1	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0095	6268	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0096	6267	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0097	6266	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0098	6270	1	0	1	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0099	6268	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	t0100	6269	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN2A_chr10_127130430_127201591	0/0	t0001	3397	76	6	29	27	4	10	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0002	3397	40	14	12	10	2	2	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0003	3397	31	6	11	2	5	7	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0004	3396	21	9	2	10	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0005	3397	14	0	0	13	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0006	3397	7	0	0	7	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0007	3397	6	4	1	0	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0008	3397	5	0	0	5	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0009	3397	5	2	2	0	1	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0010	3396	5	0	0	5	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0011	3397	5	1	0	4	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0012	3397	4	4	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591