JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSYN2A_chr10_127130430_127201591	0/0	t0013	3397	4	4	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0014	3397	4	4	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0015	3397	4	0	0	4	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0016	3397	4	4	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0017	3397	3	2	0	0	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0018	3398	3	0	1	2	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0019	3397	3	0	0	3	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/1	t0020	3397	3	1	1	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0021	3397	2	0	2	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0022	3397	2	1	1	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0023	3396	2	2	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0024	3397	2	0	2	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0025	3398	2	1	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0026	3397	1	0	0	0	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0027	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0028	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0029	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0030	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0031	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0032	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0033	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0034	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0035	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0036	3398	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0037	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0038	3397	1	0	0	0	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0039	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0040	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0041	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0042	3398	1	0	1	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0043	3396	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	1/0	t0044	3397	1	0	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0045	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0046	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0047	3398	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0048	3397	1	0	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0049	3397	1	0	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0050	3397	1	0	1	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0051	3397	1	0	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	t0052	3397	1	1	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2B_chr5_169856303_169985495	0/1	t0001	4109	90	5	32	31	11	10	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	1/0	t0002	4108	75	6	4	55	3	6	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0003	4108	59	39	5	10	1	4	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0004	4108	33	5	7	13	0	8	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0005	4109	13	12	1	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0006	4109	13	0	1	9	1	2	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0007	4109	9	9	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0008	4109	4	4	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0009	4108	2	0	0	2	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0010	4108	2	2	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495