JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INSYN2B_chr5_169856303_169985495	0/0	t0011	4109	2	0	0	0	0	2	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0012	4108	2	2	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0013	4109	2	0	0	2	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0014	4108	1	0	1	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0015	4109	1	0	0	1	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0016	4108	1	0	0	1	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0017	4108	1	1	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0018	4109	1	0	0	0	0	1	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0019	4109	1	0	0	0	0	1	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0020	4109	1	0	1	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0021	4109	1	1	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0022	4108	1	1	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0023	4108	1	1	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0024	4108	1	1	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	t0025	4109	1	1	0	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INS_chr11_2154779_2166209	0/0	t0001	133	260	18	55	142	13	32	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	1/0	t0002	133	80	66	10	1	1	1	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/1	t0003	133	35	8	10	7	4	5	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	t0004	133	1	0	1	0	0	0	copy fasta	INS	chr11	2154779	2166209
INTS10_chr8_19812416_19857067	0/0	t0001	385	257	61	45	123	8	20	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	1/1	t0002	385	141	29	29	53	5	23	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	t0003	391	11	1	3	0	5	2	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	t0004	385	6	3	1	1	0	1	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	t0005	385	4	4	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	t0006	385	1	0	0	1	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS11_chr1_1306600_1329660	1/1	t0001	312	338	81	56	135	16	48	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0002	311	10	8	2	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0003	312	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0004	312	1	0	1	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0005	312	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0006	312	1	0	0	1	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0007	311	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	t0008	312	1	0	1	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS12_chr4_105677627_105713689	1/1	t0001	330	300	90	56	123	14	15	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	t0002	330	5	0	0	5	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	t0003	330	4	0	0	3	0	1	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	t0004	330	3	0	0	3	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS13_chr12_26900181_26942981	1/1	t0001	514	371	79	67	164	16	43	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0002	514	5	5	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0003	514	3	3	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0004	514	3	0	0	0	0	3	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0005	514	2	2	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0006	514	2	2	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0007	514	1	0	1	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	t0008	514	1	1	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS14_chr15_65573757_65616131	1/1	t0001	748	265	55	45	117	12	34	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0002	748	23	7	5	7	0	4	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0003	748	17	15	2	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0004	748	6	6	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0005	765	2	2	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131