JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INTS14_chr15_65573757_65616131	0/0	t0006	751	2	2	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0007	748	2	2	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0008	751	1	1	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0009	748	1	1	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0010	748	1	0	0	0	0	1	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0011	748	1	1	0	0	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	t0012	748	1	0	0	0	0	1	copy fasta	INTS14	chr15	65573757	65616131
INTS15_chr7_6585021_6613726	1/1	t0001	829	386	93	73	160	14	44	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	t0002	829	3	0	3	0	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	t0003	829	2	0	0	0	2	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	t0004	829	1	1	0	0	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	t0005	829	1	0	0	1	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	t0006	829	1	0	0	1	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS1_chr7_1465277_1509389	0/1	t0001	409	169	60	28	61	8	11	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	1/0	t0002	409	118	23	37	39	4	14	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0003	409	9	6	0	0	0	3	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0004	409	9	0	0	9	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0005	406	4	3	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0006	409	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0007	409	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0008	409	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0009	409	1	0	0	0	1	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0010	406	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0011	409	1	0	0	0	1	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	t0012	409	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS2_chr17_61860367_61932982	0/1	t0001	2538	100	15	27	41	6	10	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0002	2538	96	15	8	68	2	3	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0003	2538	75	36	17	12	2	8	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0004	2539	44	1	5	30	1	7	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0005	2538	7	7	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0006	2539	5	0	0	5	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0007	2539	5	2	0	3	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0008	2538	4	0	0	0	0	4	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0009	2540	4	0	0	4	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0010	2539	3	2	0	0	0	1	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0011	2524	3	0	0	3	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0012	2538	2	0	0	0	0	2	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0013	2539	2	2	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0014	2538	2	2	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0015	2538	1	0	0	0	1	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0016	2538	1	1	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0017	2538	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0018	2538	1	0	1	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	1/0	t0019	2538	1	0	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0020	2539	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0021	2539	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0022	2539	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0023	2538	1	1	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0024	2538	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0025	2538	1	0	1	0	0	0	copy fasta	INTS2	chr17	61860367	61932982