JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INTS2_chr17_61860367_61932982	0/0	t0026	2538	1	0	1	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0027	2539	1	0	0	0	0	1	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	t0028	2524	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS3_chr1_153723050_153779808	0/1	t0001	2124	298	56	54	138	11	38	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0002	2124	29	17	4	3	1	4	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0003	2124	9	8	1	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0004	2124	2	2	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0005	2124	2	2	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0006	2124	2	2	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0007	2102	1	0	0	1	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0008	2124	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0009	2124	1	0	0	1	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0010	2124	1	0	0	1	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0011	2124	1	0	1	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0012	2124	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	t0013	2124	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS4_chr11_77873720_77999668	1/1	t0001	255	360	81	62	167	16	32	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	t0002	255	1	1	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	t0003	255	1	0	0	1	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS5_chr11_62641848_62658302	1/1	t0001	226	366	90	74	146	16	38	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	t0002	217	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	t0003	226	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS6L_chrX_135515660_135587510	0/1	t0001	1208	224	56	36	100	9	22	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	1/0	t0002	1208	18	4	2	11	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	t0003	1208	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	t0004	1208	1	0	1	0	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6_chr13_51356577_51458036	1/1	t0001	4687	149	31	28	69	2	17	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0002	4687	31	22	6	2	0	1	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0003	4686	25	5	0	16	0	4	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0004	4686	23	4	2	14	2	1	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0005	4688	15	1	4	5	3	2	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0006	4688	13	0	1	9	1	2	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0007	4686	13	0	10	0	0	3	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0008	4687	9	0	1	7	0	1	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0009	4687	7	0	3	3	1	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0010	4687	6	6	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0011	4687	6	0	0	6	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0012	4688	5	0	0	2	0	3	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0013	4688	5	1	3	0	1	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0014	4687	5	0	1	1	0	3	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0015	4685	5	0	0	5	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0016	4687	4	0	0	4	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0017	4687	3	3	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0018	4688	2	0	1	0	1	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0019	4687	2	2	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0020	4687	2	0	0	0	0	2	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0021	4688	2	0	0	2	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0022	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0023	4688	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0024	4688	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036