JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INTS6_chr13_51356577_51458036	0/0	t0025	4688	1	0	0	0	0	1	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0026	4688	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0027	4688	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0028	4688	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0029	4687	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0030	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0031	4687	1	0	0	0	0	1	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0032	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0033	4687	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0034	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0035	4687	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0036	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0037	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0038	4686	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0039	4686	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0040	4686	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0041	4686	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0042	4687	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0043	4687	1	0	1	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0044	4686	1	0	0	0	1	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0045	4687	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0046	4687	1	0	0	0	0	1	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	t0047	4688	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS7_chr1_211935403_212040557	1/0	t0001	1542	99	15	12	60	2	9	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0002	1542	93	5	18	48	8	14	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/1	t0003	1542	71	7	15	33	2	13	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0004	1542	36	18	3	7	1	7	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0005	1542	15	13	2	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0006	1542	7	0	7	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0007	1542	4	4	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0008	1542	3	1	2	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0009	1542	3	2	1	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0010	1540	3	2	1	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0011	1542	3	0	0	3	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0012	1542	2	2	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0013	1542	2	0	0	0	2	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0014	1542	1	0	0	0	0	1	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0015	1542	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0016	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0017	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0018	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0019	1542	1	0	1	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0020	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0021	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0022	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0023	1542	1	0	0	0	1	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	t0024	1542	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS8_chr8_94818287_94886746	1/1	t0001	1658	289	84	48	117	10	28	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0002	1658	4	4	0	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0003	1658	3	2	1	0	0	0	copy fasta	INTS8	chr8	94818287	94886746