JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INTS8_chr8_94818287_94886746	0/0	t0004	1658	3	0	3	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0005	1658	3	0	0	3	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0006	1658	3	0	0	0	0	3	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0007	1658	1	1	0	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0008	1658	1	1	0	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0009	1658	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0010	1658	1	0	0	0	0	1	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	t0011	1658	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS9_chr8_28762661_28894969	1/1	t0001	573	325	63	60	153	12	35	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0002	573	12	9	2	1	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0003	573	8	8	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0004	573	8	8	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0005	573	2	2	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0006	573	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0007	573	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	t0008	573	1	0	0	0	0	1	copy fasta	INTS9	chr8	28762661	28894969
INTU_chr4_127627957_127731737	0/0	t0001	10380	63	3	12	32	4	12	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/1	t0002	10379	59	16	14	16	6	6	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0003	10380	51	0	7	44	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0004	10380	22	0	7	15	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0005	10380	17	0	4	13	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	1/0	t0006	10380	13	9	2	0	1	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0007	10382	10	10	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0008	10380	9	0	1	7	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0009	10378	8	1	5	0	0	2	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0010	10372	8	8	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0011	10381	6	0	0	6	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0012	10381	4	4	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0013	10381	3	2	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0014	10379	3	0	0	1	2	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0015	10378	3	3	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0016	10380	3	1	1	0	1	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0017	10378	3	2	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0018	10372	3	3	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0019	10376	2	2	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0020	10380	2	0	0	2	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0021	10381	2	0	0	2	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0022	10380	2	0	0	2	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0023	10381	2	0	0	0	0	2	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0024	10380	2	0	1	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0025	10381	2	0	1	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0026	10373	2	1	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0027	10382	2	1	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0028	10377	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0029	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0030	10381	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0031	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0032	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0033	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0034	10379	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737