JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INTU_chr4_127627957_127731737	0/0	t0035	10379	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0036	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0037	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0038	10380	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0039	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0040	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0041	10380	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0042	10380	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0043	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0044	10379	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0045	10381	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0046	10380	1	0	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0047	10381	1	0	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0048	10379	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0049	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0050	10381	1	0	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0051	10381	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0052	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0053	10379	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0054	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0055	10379	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0056	10359	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0057	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0058	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0059	10380	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0060	10379	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0061	10379	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0062	10381	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0063	10381	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0064	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0065	10379	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0066	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0067	10378	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0068	10372	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0069	10380	1	0	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0070	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0071	10379	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0072	10378	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0073	10380	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0074	10380	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0075	10379	1	0	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0076	10383	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0077	10382	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0078	10381	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	t0079	10382	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INVS_chr9_100094243_100307175	0/0	t0001	1692	48	32	11	2	1	2	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0002	1694	25	0	8	14	1	2	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	1/1	t0003	1700	19	0	12	1	2	2	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0004	1698	19	1	1	14	1	2	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0005	1706	7	7	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175