JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INVS_chr9_100094243_100307175	0/0	t0006	1704	6	1	4	0	1	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0007	1696	6	6	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0008	1694	6	3	0	3	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0009	1696	5	0	2	2	0	1	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0010	1698	4	0	0	2	1	1	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0011	1684	4	4	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0012	1682	4	4	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0013	1710	4	0	1	0	1	2	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0014	1698	3	0	0	3	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0015	1716	3	0	2	0	0	1	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0016	1712	2	1	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0017	1708	2	0	2	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0018	1694	2	0	0	0	2	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0019	1704	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0020	1716	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0021	1710	1	0	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0022	1708	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0023	1708	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0024	1698	1	0	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0025	1696	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0026	1690	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0027	1722	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0028	1720	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0029	1714	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0030	1692	1	0	0	0	0	1	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	t0031	1698	1	0	0	1	0	0	copy fasta	INVS	chr9	100094243	100307175
IP6K1_chr3_49719294_49791542	0/0	t0001	3146	118	25	21	55	6	11	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	1/1	t0002	3146	113	39	22	38	2	10	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0003	3146	7	6	0	0	0	1	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0004	3147	3	3	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0005	3146	3	3	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0006	3145	3	0	3	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0007	3146	2	2	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0008	3146	2	2	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0009	3146	2	0	0	0	2	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0010	3146	1	1	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0011	3146	1	0	0	1	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0012	3146	1	0	1	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0013	3146	1	0	1	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0014	3146	1	1	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0015	3146	1	1	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	t0016	3146	1	1	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K2_chr3_48683003_48722221	1/1	t0001	466	254	80	44	82	16	30	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	t0002	466	2	2	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	t0003	466	2	2	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	t0004	466	1	1	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	t0005	466	1	1	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	t0006	466	1	0	0	1	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	t0007	466	1	0	0	1	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K3_chr6_33716662_33751905	0/0	t0001	1386	148	8	21	85	7	27	copy fasta	IP6K3	chr6	33716662	33751905