JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IP6K3_chr6_33716662_33751905	0/0	t0002	1386	57	43	4	9	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0003	1386	28	15	4	7	2	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0004	1386	22	0	16	0	3	3	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0005	1386	20	2	8	5	3	2	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	1/0	t0006	1386	18	13	1	1	0	2	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0007	1386	17	0	4	13	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0008	1386	9	2	2	2	0	3	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0009	1386	9	0	1	8	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/1	t0010	1386	6	0	3	0	2	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0011	1386	6	6	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0012	1386	3	3	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0013	1386	3	0	0	2	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0014	1386	2	2	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0015	1386	2	2	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0016	1386	2	1	1	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0017	1386	2	0	2	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0018	1386	2	0	1	0	1	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0019	1386	2	1	1	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0020	1386	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0021	1386	1	0	1	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0022	1386	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0023	1386	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0024	1386	1	0	0	0	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0025	1386	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0026	1386	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	t0027	1386	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IPCEF1_chr6_154149496_154361803	1/0	t0001	5526	88	26	14	28	3	16	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0002	5526	37	1	11	22	1	2	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/1	t0003	5526	29	0	3	20	1	4	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0004	5526	29	20	5	0	2	2	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0005	5526	22	20	2	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0006	5526	17	1	6	2	0	8	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0007	5522	11	10	1	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0008	5525	5	5	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0009	5526	4	1	2	1	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0010	5526	3	0	0	3	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0011	5526	2	2	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0012	5526	2	0	2	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0013	5526	2	0	2	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0014	5526	2	0	2	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0015	5526	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0016	5526	1	0	1	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0017	5526	1	0	1	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0018	5526	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0019	5526	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0020	5526	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0021	5526	1	0	0	1	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0022	5526	1	0	0	1	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0023	5526	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	t0024	5526	1	0	0	0	1	0	copy fasta	IPCEF1	chr6	154149496	154361803