JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IPCEF1_chr6_154149496_154361803	0/0	t0025	5522	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPMK_chr10_58186517_58272894	1/0	t0001	4843	140	14	22	82	2	19	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0002	4844	88	4	5	67	1	11	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0003	4844	30	24	4	0	0	2	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0004	4845	11	9	2	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0005	4844	10	5	3	0	1	1	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0006	4844	10	1	7	0	0	2	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0007	4843	6	2	3	0	0	1	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0008	4844	4	4	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0009	4844	4	2	2	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0010	4845	4	3	1	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/1	t0011	4843	3	0	2	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0012	4843	3	1	1	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0013	4845	3	3	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0014	4843	2	2	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0015	4843	2	1	1	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0016	4843	2	2	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0017	4843	2	0	0	2	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0018	4843	2	2	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0019	4844	2	0	0	2	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0020	4844	2	2	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0021	4844	2	0	0	0	0	2	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0022	4845	2	1	1	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0023	4843	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0024	4843	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0025	4843	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0026	4844	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0027	4844	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0028	4844	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0029	4844	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0030	4844	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0031	4844	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0032	4844	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0033	4844	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	t0034	4844	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPO11_chr5_62407763_62633582	1/1	t0001	1438	276	53	44	138	15	24	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0002	1438	23	0	6	17	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0003	1438	12	11	1	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0004	1438	7	7	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0005	1438	6	0	2	2	1	1	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0006	1438	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0007	1438	1	0	0	1	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0008	1438	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0009	1438	1	0	0	0	0	1	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0010	1438	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	t0011	1438	1	0	1	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO13_chr1_43941950_43973022	1/1	t0001	992	345	76	51	181	6	29	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	t0002	993	10	1	0	6	0	3	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	t0003	992	8	8	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	t0004	992	1	0	1	0	0	0	copy fasta	IPO13	chr1	43941950	43973022