JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IPO13_chr1_43941950_43973022	0/0	t0005	992	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	t0006	992	1	0	1	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	t0007	992	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	t0008	992	1	0	1	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO4_chr14_24175219_24193816	1/1	t0001	253	442	88	70	216	16	50	copy fasta	IPO4	chr14	24175219	24193816
IPO5_chr13_97948675_98029296	1/0	t0001	2709	233	72	38	96	4	22	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/1	t0002	2709	51	10	22	4	2	12	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0003	2709	50	1	2	40	0	7	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0004	2709	14	0	0	14	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0005	2709	8	0	0	8	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0006	2709	5	4	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0007	2709	2	0	0	2	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0008	2709	2	0	1	0	0	1	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0009	2709	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0010	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0011	2709	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0012	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0013	2709	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0014	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0015	2709	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0016	2709	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0017	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0018	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0019	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0020	2709	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0021	2709	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0022	2709	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	t0023	2709	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO7_chr11_9379652_9453127	1/0	t0001	3046	143	28	30	71	2	11	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/1	t0002	3045	86	1	17	54	3	10	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0003	3045	41	27	11	0	1	2	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0004	3045	24	14	2	0	2	6	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0005	3045	5	0	0	5	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0006	3045	3	3	0	0	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0007	3045	3	3	0	0	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0008	3045	2	0	0	2	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0009	3046	2	0	0	1	0	1	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0010	3046	2	0	0	2	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0011	3045	1	1	0	0	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0012	3045	1	1	0	0	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	t0013	3046	1	0	0	1	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO8_chr12_30623988_30700869	1/0	t0001	2095	118	9	24	66	6	12	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0002	2095	83	4	13	58	3	5	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0003	2095	61	35	6	8	1	11	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0004	2093	24	0	0	24	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0005	2095	22	0	9	7	1	5	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0006	2095	20	20	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0007	2093	16	0	6	1	0	9	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0008	2095	9	7	2	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0009	2095	7	0	6	0	1	0	copy fasta	IPO8	chr12	30623988	30700869