JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IPP_chr1_45693711_45755653	0/0	t0001	1353	48	23	11	7	0	7	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0002	1364	41	32	4	3	0	2	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/1	t0003	1360	16	7	6	0	0	2	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	1/0	t0004	1363	10	8	1	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0005	1363	6	6	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0006	1353	2	0	0	2	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0007	1353	1	1	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0008	1364	1	1	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0009	1353	1	0	0	0	0	1	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0010	1363	1	1	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	t0011	1363	1	1	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IQANK1_chr8_143729139_143795645	0/1	t0001	123	347	92	58	140	16	40	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	t0002	123	2	0	0	2	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQCA1L_chr7_151185873_151210496	1/1	t0001	150	448	98	86	200	16	46	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1_chr2_236319151_236512476	1/1	t0001	747	115	27	32	39	4	11	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0002	747	30	17	6	0	2	5	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0003	747	16	3	1	10	0	2	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0004	745	14	12	2	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0005	747	12	10	0	2	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0006	747	8	0	3	5	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0007	747	5	5	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0008	747	5	5	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0009	747	2	2	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	t0010	745	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCB1_chr3_121764761_121840060	0/1	t0001	775	168	54	33	54	4	22	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	1/0	t0002	781	121	24	28	52	6	10	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0003	775	6	0	3	0	3	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0004	775	4	4	0	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0005	781	3	0	0	3	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0006	781	2	0	2	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0007	781	2	0	0	2	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0008	775	1	0	0	1	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	t0009	781	1	0	0	0	1	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCC_chr1_32200671_32213682	1/1	t0001	612	337	86	53	146	13	37	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	t0002	612	74	6	15	43	1	9	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	t0003	612	1	0	0	1	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCD_chr12_113190446_113226094	1/1	t0001	321	284	85	48	110	9	30	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	t0002	321	26	0	1	23	0	2	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	t0003	321	15	0	0	14	0	1	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	t0004	321	3	1	1	0	1	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	t0005	321	2	2	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	t0006	321	1	0	0	0	0	1	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	t0007	321	1	0	0	1	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCE_chr7_2553979_2619728	1/0	t0001	4770	67	6	13	39	2	6	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0002	4787	49	5	7	33	0	4	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0003	4787	47	2	4	36	2	3	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0004	4770	22	1	4	16	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0005	4774	14	0	7	3	0	4	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0006	4774	11	0	3	2	2	4	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0007	4772	10	0	6	0	2	2	copy fasta	IQCE	chr7	2553979	2619728