JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQCE_chr7_2553979_2619728	0/0	t0008	4782	8	0	8	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0009	4776	7	5	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0010	4775	7	7	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0011	4766	7	0	0	7	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0012	4787	5	0	0	5	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0013	4788	5	0	0	4	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0014	4784	5	4	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0015	4787	5	0	5	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0016	4771	4	0	2	1	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0017	4779	4	4	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0018	4787	4	0	0	4	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0019	4802	4	4	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0020	4805	3	3	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0021	4774	3	3	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0022	4775	3	3	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0023	4751	3	2	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0024	4766	3	3	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/1	t0025	4766	3	0	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0026	4765	3	2	0	0	1	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0027	4780	3	2	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0028	4775	2	0	0	2	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0029	4788	2	0	1	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0030	4805	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0031	4769	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0032	4774	2	0	0	0	2	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0033	4785	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0034	4780	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0035	4787	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0036	4803	2	0	0	0	1	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0037	4774	2	0	1	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0038	4774	2	0	0	1	1	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0039	4787	2	0	0	1	1	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0040	4787	2	0	0	0	0	2	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0041	4766	2	0	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0042	4766	2	0	1	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0043	4766	2	0	0	2	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0044	4788	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0045	4770	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0046	4767	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0047	4773	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0048	4771	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0049	4788	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0050	4788	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0051	4787	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0052	4765	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0053	4776	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0054	4774	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0055	4785	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0056	4774	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0057	4774	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728