Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD18_chr4_127960406_128044953	0/0	t0064	4346	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0065	4359	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0066	4350	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0067	4344	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0068	4354	1	0	0	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0069	4348	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/1	t0070	4350	1	0	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0071	4352	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0072	4354	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0073	4356	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0074	4356	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0075	4358	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0076	4362	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0077	4358	1	0	0	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0078	4358	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0079	4345	1	0	0	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0080	4361	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0081	4347	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0082	4349	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0083	4351	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0084	4353	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0085	4357	1	0	0	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0086	4353	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0087	4357	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0088	4345	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0089	4330	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0090	4352	1	0	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0091	4362	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0092	4346	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0093	4683	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0094	4348	1	0	0	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0095	4355	1	0	0	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD1_chr2_27118815_27135812	1/1	t0001	203	396	89	73	178	18	36	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	t0002	203	3	3	0	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	t0003	203	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD2_chr15_89083456_89207355	0/0	t0001	7146	88	22	15	36	2	13	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0002	7146	31	6	7	13	1	4	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/1	t0003	7146	20	0	3	8	2	6	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0004	7129	11	11	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0005	7144	6	0	1	5	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0006	7146	6	5	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0007	7147	5	5	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0008	7146	5	5	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0009	7145	5	3	2	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0010	7146	4	4	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0011	7146	4	1	1	0	0	2	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0012	7146	3	3	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0013	7146	3	3	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0014	7146	3	2	0	0	1	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0015	7146	3	3	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355