JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQCE_chr7_2553979_2619728	0/0	t0108	4787	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0109	4782	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0110	4746	1	0	0	0	1	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0111	4751	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0112	4766	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0113	4782	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0114	4766	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0115	4772	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0116	4774	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0117	4789	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	t0118	4787	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCF1_chr3_51889876_51908353	1/1	t0001	96	357	94	61	146	18	36	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	t0002	96	1	0	1	0	0	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF2_chr3_51856615_51868424	1/1	t0001	107	426	92	76	196	18	42	copy fasta	IQCF2	chr3	51856615	51868424
IQCF3_chr3_51824426_51835856	1/1	t0001	106	266	42	59	114	14	35	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	t0002	106	74	48	7	16	2	1	copy fasta	IQCF3	chr3	51824426	51835856
IQCF5_chr3_51868721_51880601	1/1	t0001	83	373	96	64	157	18	36	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	t0002	83	4	0	0	4	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	t0003	83	1	0	0	1	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF6_chr3_51773563_51784237	1/1	t0001	74	418	92	70	196	16	42	copy fasta	IQCF6	chr3	51773563	51784237
IQCG_chr3_197884077_197964991	1/1	t0001	901	252	66	59	86	9	30	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0002	901	16	9	2	1	1	3	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0003	901	4	4	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0004	901	2	2	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0005	901	2	0	0	2	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0006	901	1	0	0	0	0	1	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0007	901	1	1	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0008	901	1	0	1	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	t0009	901	1	0	0	1	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCH_chr15_67249786_67506804	1/1	t0001	1170	264	70	36	126	10	20	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	t0002	1170	5	5	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	t0003	1170	3	3	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	t0004	1170	1	1	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	t0005	1170	1	1	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	t0006	1170	1	0	0	1	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	t0007	1170	1	0	0	1	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCJ_chr3_159064319_159268747	0/1	t0001	1131	133	44	25	45	6	12	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	1/0	t0002	1131	102	26	17	42	4	12	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0003	1131	4	0	0	4	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0004	1131	3	2	1	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0005	1131	2	2	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0006	1131	2	2	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0007	1131	2	0	0	2	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0008	1131	1	0	1	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0009	1131	1	1	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0010	1131	1	0	0	1	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	t0011	1131	1	1	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCK_chr16_19713271_19863467	0/0	t0001	1956	132	41	16	57	2	16	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/1	t0002	1956	43	7	12	12	5	6	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0003	1955	20	10	6	1	2	1	copy fasta	IQCK	chr16	19713271	19863467