JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQCK_chr16_19713271_19863467	0/0	t0004	1953	9	7	2	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0005	1954	8	8	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0006	1957	7	0	3	0	0	4	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0007	1956	6	6	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	1/0	t0008	1956	4	1	1	0	1	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0009	1955	3	3	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0010	1957	3	1	1	1	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0011	1956	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0012	1956	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0013	1956	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0014	1956	1	0	1	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0015	1955	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0016	1955	1	0	0	0	0	1	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0017	1957	1	0	0	1	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0018	1957	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	t0019	1957	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCM_chr4_149346709_149820843	1/1	t0001	573	185	53	18	79	4	29	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	t0002	572	65	20	7	31	2	5	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	t0003	573	1	1	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	t0004	572	1	0	1	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCN_chr19_18252098_18279452	1/1	t0001	242	324	90	62	111	15	44	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	t0002	242	109	0	17	89	1	2	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	t0003	242	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQGAP1_chr15_90383242_90507239	1/0	t0001	2232	87	10	12	52	1	11	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/1	t0002	2233	71	9	17	29	3	12	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0003	2234	54	26	7	14	5	2	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0004	2233	52	31	14	3	1	3	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0005	2233	35	0	0	33	0	2	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0006	2233	27	0	0	24	1	2	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0007	2232	7	0	2	5	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0008	2233	2	0	0	2	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0009	2234	2	2	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0010	2234	2	2	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0011	2234	2	2	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0012	2234	2	0	0	2	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0013	2233	2	0	0	0	2	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0014	2233	2	0	0	0	1	1	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0015	2233	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0016	2234	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0017	2233	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0018	2233	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0019	2233	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0020	2232	1	0	0	0	0	1	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0021	2233	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0022	2233	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0023	2233	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0024	2232	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0025	2234	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0026	2234	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	t0027	2233	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239