JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQGAP2_chr5_76398285_76713132	0/0	t0001	1077	47	24	5	15	0	3	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0002	1081	39	11	10	13	1	4	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	1/0	t0003	1081	34	8	6	13	2	4	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/1	t0004	1077	22	7	7	1	1	5	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0005	1081	19	2	0	14	0	3	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0006	1081	18	1	5	11	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0007	1077	14	3	2	8	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0008	1077	12	3	3	1	0	5	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0009	1076	6	6	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0010	1081	2	0	0	0	0	2	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0011	1077	2	0	2	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0012	1081	2	0	0	2	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0013	1081	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0014	1077	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0015	1081	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0016	1076	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	t0017	1081	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP3_chr1_156520405_156577565	0/1	t0001	1117	152	29	27	76	4	15	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0002	1122	67	9	16	32	2	8	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0003	1118	34	16	2	14	1	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	1/0	t0004	1118	13	12	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0005	1120	10	0	3	2	2	3	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0006	1110	10	8	2	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0007	1123	10	0	4	4	1	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0008	1116	9	1	3	4	1	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0009	1119	8	3	3	0	1	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0010	1125	8	8	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0011	1122	5	0	0	5	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0012	1117	3	3	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0013	1118	3	3	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0014	1119	2	0	0	1	0	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0015	1120	2	1	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0016	1117	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0017	1118	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0018	1125	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	t0019	1119	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQSEC1_chr3_12892043_13078429	0/1	t0001	4358	42	7	11	15	3	5	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0002	4354	33	1	13	17	0	2	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0003	4358	28	20	2	6	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0004	4358	13	12	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0005	4358	12	1	2	6	0	3	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0006	4358	9	0	4	1	1	3	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0007	4354	9	0	0	4	0	5	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0008	4358	7	4	1	1	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0009	4358	6	1	0	2	0	3	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0010	4358	4	0	1	3	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0011	4359	4	1	3	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0012	4362	3	3	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0013	4354	3	0	2	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0014	4358	3	3	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429