JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQSEC1_chr3_12892043_13078429	0/0	t0015	4358	3	1	0	1	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0016	4354	2	0	0	2	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0017	4356	2	0	0	0	2	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0018	4358	2	0	0	2	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0019	4358	2	1	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0020	4358	2	1	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0021	4354	2	0	1	0	1	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0022	4358	2	2	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0023	4358	2	2	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0024	4358	2	1	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0025	4354	2	0	0	1	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0026	4358	2	0	0	0	0	2	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0027	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0028	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0029	4358	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0030	4362	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0031	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	1/0	t0032	4356	1	0	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0033	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0034	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0035	4355	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0036	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0037	4354	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0038	4354	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0039	4354	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0040	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0041	4354	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0042	4358	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0043	4360	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0044	4360	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0045	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0046	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0047	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0048	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0049	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0050	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0051	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0052	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0053	4358	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0054	4358	1	0	0	0	1	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0055	4354	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0056	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0057	4369	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0058	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0059	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0060	4355	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0061	4354	1	0	0	0	1	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0062	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0063	4354	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0064	4358	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429