JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQSEC1_chr3_12892043_13078429	0/0	t0065	4358	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0066	4360	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0067	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0068	4358	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0069	4358	1	0	0	0	1	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0070	4358	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0071	4359	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0072	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0073	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0074	4358	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	t0075	4354	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC2_chrX_53227876_53326350	1/1	t0001	1571	196	62	25	87	5	15	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0002	1571	6	1	5	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0003	1571	4	4	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0004	1570	3	2	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0005	1571	1	0	0	0	0	1	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0006	1571	1	1	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0007	1570	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	t0008	1572	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53261328_53286584	1/1	t0001	701	276	65	43	130	7	29	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0002	708	15	13	2	0	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0003	701	3	0	0	0	0	3	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0004	701	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0005	700	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0006	700	1	0	1	0	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0007	701	1	0	1	0	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	t0008	700	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC3_chr12_61767_183455	1/0	t0001	3539	69	15	19	23	3	8	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/1	t0002	3430	66	5	16	35	3	6	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0003	3535	18	0	1	10	2	5	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0004	3483	10	6	3	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0005	3532	8	8	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0006	3535	7	0	0	7	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0007	3539	7	5	1	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0008	3539	7	5	2	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0009	3483	7	7	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0010	3539	5	0	1	0	3	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0011	3528	5	0	0	1	0	4	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0012	3448	5	5	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0013	3539	4	4	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0014	3430	3	0	2	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0015	3578	3	2	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0016	3539	3	0	2	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0017	3535	2	0	0	2	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0018	3539	2	0	2	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0019	3535	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0020	3585	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0021	3535	2	0	0	2	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0022	3533	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0023	3482	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455