JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IQSEC3_chr12_61767_183455	0/0	t0024	3483	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0025	3483	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0026	3435	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0027	3483	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0028	3489	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0029	3535	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0030	3539	1	0	0	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0031	3585	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0032	3539	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0033	3539	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0034	3489	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0035	3589	1	0	0	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0036	3535	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0037	3539	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0038	3535	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0039	3537	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0040	3539	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0041	3428	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0042	3533	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0043	3430	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0044	3430	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0045	3432	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0046	3539	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0047	3537	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0048	3535	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0049	3537	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0050	3533	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0051	3533	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0052	3480	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0053	3430	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0054	3432	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0055	3380	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0056	3532	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0057	3532	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0058	3535	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0059	3535	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0060	3483	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0061	3539	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	t0062	3483	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQUB_chr7_123447193_123539595	1/1	t0001	659	271	86	38	98	11	36	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	t0002	659	98	8	16	62	4	8	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	t0003	659	1	0	0	0	1	0	copy fasta	IQUB	chr7	123447193	123539595
IRAG1_chr11_10568095_10698755	0/0	t0001	3392	68	15	20	20	6	7	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/1	t0002	3392	66	1	18	28	3	15	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0003	3392	37	15	3	15	2	2	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0004	3392	18	15	2	0	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0005	3389	16	12	2	0	0	2	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0006	3393	11	0	3	2	3	3	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0007	3390	10	10	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0008	3393	9	1	8	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755