JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRAG1_chr11_10568095_10698755	0/0	t0009	3392	8	0	7	0	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0010	3391	5	5	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	1/0	t0011	3391	5	0	0	2	1	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0012	3392	4	4	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0013	3392	3	2	1	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0014	3392	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0015	3392	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0016	3391	2	1	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0017	3392	2	0	0	2	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0018	3392	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0019	3389	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0020	3392	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0021	3393	1	0	0	0	1	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0022	3392	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0023	3392	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0024	3392	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0025	3390	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0026	3392	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	t0027	3390	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG2_chr12_25047706_25113335	1/1	t0001	973	281	71	73	91	9	35	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0002	973	24	0	8	13	2	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0003	973	12	12	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0004	973	6	0	1	1	3	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0005	973	4	0	3	0	0	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0006	973	4	0	0	3	0	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0007	973	3	3	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0008	973	2	2	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0009	973	2	0	0	2	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0010	973	2	0	0	1	0	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0011	973	1	1	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0012	973	1	1	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0013	973	1	0	0	1	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	t0014	973	1	0	1	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAK1BP1_chr6_78862551_78908102	0/0	t0001	4792	23	0	6	13	0	4	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/1	t0002	4796	18	0	2	11	1	3	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0003	4786	16	1	5	6	0	4	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0004	4788	14	1	2	10	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0005	4779	11	0	1	4	4	2	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0006	4798	10	0	1	8	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0007	4790	10	4	3	3	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0008	4781	10	0	3	7	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0009	4794	9	0	2	6	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0010	4787	9	2	7	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0011	4783	9	0	1	8	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0012	4778	8	1	0	1	1	5	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0013	4774	8	0	0	8	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0014	4800	7	0	0	6	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0015	4790	7	3	0	4	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0016	4802	6	0	2	4	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0017	4794	5	1	2	2	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102