JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRAK1BP1_chr6_78862551_78908102	0/0	t0068	4794	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0069	4791	1	0	0	0	1	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0070	4793	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0071	4789	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0072	4790	1	0	0	0	1	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0073	4791	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0074	4790	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0075	4806	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0076	4791	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0077	4791	1	0	0	0	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0078	4795	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0079	4790	1	0	0	0	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0080	4789	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0081	4781	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0082	4788	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0083	4780	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0084	4788	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0085	4792	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0086	4787	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0087	4787	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0088	4790	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0089	4787	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0090	4787	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0091	4786	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0092	4784	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0093	4788	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0094	4785	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0095	4784	1	0	0	0	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0096	4784	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0097	4800	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0098	4774	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0099	4783	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0100	4783	1	0	0	0	1	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0101	4782	1	0	0	0	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0102	4782	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0103	4786	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0104	4775	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0105	4774	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0106	4780	1	0	0	0	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0107	4781	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0108	4780	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0109	4764	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0110	4779	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0111	4781	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0112	4783	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	1/0	t0113	4795	1	0	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0114	4779	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0115	4779	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0116	4778	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0117	4779	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102