Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD49_chr11_94488984_94504578	0/0	t0010	1189	1	0	0	1	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0011	1189	1	1	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD50_chr4_124659048_124717732	1/0	t0001	4509	242	46	53	111	9	22	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/1	t0002	4511	86	23	9	43	3	7	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0003	4509	15	6	1	7	0	1	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0004	4505	7	6	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0005	4509	5	0	0	5	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0006	4509	4	4	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0007	4509	3	0	1	2	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0008	4509	3	3	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0009	4509	2	0	0	2	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0010	4509	2	0	2	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0011	4505	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0012	4509	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0013	4505	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0014	4511	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0015	4509	1	0	0	0	0	1	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0016	4511	1	0	0	0	0	1	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0017	4509	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0018	4509	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0019	4509	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0020	4509	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0021	4509	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0022	4509	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	t0023	4509	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD52_chr12_56232807_56263384	1/1	t0001	5451	170	52	34	58	9	15	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0002	5451	23	0	0	22	0	1	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0003	5451	18	18	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0004	5451	9	0	0	9	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0005	5451	6	0	4	0	0	2	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0006	5452	6	5	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0007	5451	6	0	4	0	2	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0008	5452	4	0	1	2	0	1	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0009	5451	3	3	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0010	5451	2	1	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0011	5451	2	0	0	2	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0012	5452	2	0	0	2	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0013	5451	2	0	0	2	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0014	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0015	5451	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0016	5451	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0017	5451	1	0	0	0	0	1	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0018	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0019	5451	1	0	0	0	0	1	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0020	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0021	5451	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0022	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0023	5451	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0024	5451	1	0	0	0	0	1	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0025	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384