JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRAK1BP1_chr6_78862551_78908102	0/0	t0118	4770	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0119	4789	1	0	0	0	0	1	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0120	4787	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0121	4775	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0122	4790	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0123	4784	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	t0124	4764	1	0	1	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1_chrX_154005507_154024902	0/0	t0001	1443	253	57	47	116	9	24	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0002	1443	11	10	1	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0003	1443	6	0	0	6	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0004	1443	3	3	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0005	1417	1	0	0	0	0	1	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0006	1442	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0007	1443	1	1	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0008	1442	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0009	1443	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0010	1443	1	0	0	0	0	1	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	t0011	1440	1	1	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK2_chr3_10159919_10248745	1/1	t0001	1554	252	58	60	86	12	34	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0002	1549	18	17	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0003	1554	11	10	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0004	1554	4	0	0	2	0	2	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0005	1554	2	2	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0006	1554	1	0	0	0	0	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0007	1554	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0008	1554	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0009	1554	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	t0010	1554	1	0	0	0	0	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK3_chr12_66184214_66259622	0/1	t0001	6536	44	6	7	23	2	5	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0002	6536	33	1	0	31	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0003	6536	32	3	9	10	3	7	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0004	6536	27	0	3	23	1	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0005	6536	17	5	3	5	4	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0006	6536	13	0	0	13	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0007	6536	7	0	2	3	2	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0008	6536	7	3	1	1	0	2	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0009	6536	5	0	2	0	0	3	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0010	6538	5	5	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0011	6536	5	0	0	5	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0012	6536	5	0	0	4	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0013	6536	5	2	0	3	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0014	6537	4	0	1	1	2	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0015	6535	4	0	0	4	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0016	6536	4	0	1	3	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0017	6536	4	1	1	2	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0018	6536	4	4	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0019	6536	3	1	1	0	1	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0020	6536	3	3	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0021	6536	3	3	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0022	6536	3	3	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622