JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRAK3_chr12_66184214_66259622	0/0	t0023	6536	3	3	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0024	6537	3	0	0	2	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0025	6536	3	0	3	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0026	6535	3	0	0	3	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0027	6537	2	0	2	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0028	6536	2	1	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0029	6536	2	0	2	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0030	6536	2	0	0	1	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0031	6538	2	2	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	1/0	t0032	6538	2	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0033	6535	2	0	0	2	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0034	6535	2	0	0	2	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0035	6537	2	0	0	1	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0036	6536	2	2	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0037	6536	2	2	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0038	6537	2	0	2	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0039	6537	2	0	0	0	1	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0040	6537	2	2	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0041	6537	2	2	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0042	6537	2	2	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0043	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0044	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0045	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0046	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0047	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0048	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0049	6537	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0050	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0051	6536	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0052	6538	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0053	6538	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0054	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0055	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0056	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0057	6535	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0058	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0059	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0060	6535	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0061	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0062	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0063	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0064	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0065	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0066	6536	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0067	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0068	6537	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0069	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0070	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0071	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0072	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622